TranSMART loader
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Data model
transmart_loader
TranSMART loader
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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N
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O
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P
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R
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S
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T
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V
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W
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Y
A
add_child() (transmart_loader.transmart.TreeNode method)
B
Black (transmart_loader.console.Console attribute)
BlackBackground (transmart_loader.console.Console attribute)
Blue (transmart_loader.console.Console attribute)
C
Categorical (transmart_loader.copy_writer.VisualAttribute attribute)
(transmart_loader.transmart.ValueType attribute)
CategoricalValue (class in transmart_loader.transmart)
close() (transmart_loader.tsv_writer.TsvWriter method)
CollectionValidator (class in transmart_loader.collection_validator)
CollectionVisitor (class in transmart_loader.collection_visitor)
Concept (class in transmart_loader.transmart)
ConceptNode (class in transmart_loader.transmart)
concepts_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
Console (class in transmart_loader.console)
Container (transmart_loader.copy_writer.VisualAttribute attribute)
CsvWriter (class in transmart_loader.csv_types)
D
DataCollection (class in transmart_loader.transmart)
Date (transmart_loader.copy_writer.VisualAttribute attribute)
(transmart_loader.transmart.ValueType attribute)
DateValue (class in transmart_loader.transmart)
Dimension (class in transmart_loader.transmart)
dimensions_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
E
error() (transmart_loader.console.Console static method)
F
Folder (transmart_loader.copy_writer.VisualAttribute attribute)
format_date() (in module transmart_loader.copy_writer)
G
get_concept_node_row() (in module transmart_loader.copy_writer)
get_folder_node_row() (in module transmart_loader.copy_writer)
get_study_node_row() (in module transmart_loader.copy_writer)
Green (transmart_loader.console.Console attribute)
GreenBackground (transmart_loader.console.Console attribute)
Grey (transmart_loader.console.Console attribute)
I
info() (transmart_loader.console.Console static method)
init_writers() (transmart_loader.copy_writer.TransmartCopyWriter method)
L
Leaf (transmart_loader.copy_writer.VisualAttribute attribute)
LoaderException
N
Numeric (transmart_loader.transmart.ValueType attribute)
Numerical (transmart_loader.copy_writer.VisualAttribute attribute)
NumericalValue (class in transmart_loader.transmart)
O
Observation (class in transmart_loader.transmart)
ObservationMetadata (class in transmart_loader.transmart)
observations_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
P
Patient (class in transmart_loader.transmart)
patient_mappings_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
PatientMapping (class in transmart_loader.transmart)
patients_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
prepare_output_dir() (transmart_loader.copy_writer.TransmartCopyWriter method)
R
Red (transmart_loader.console.Console attribute)
RedBackground (transmart_loader.console.Console attribute)
Reset (transmart_loader.console.Console attribute)
S
studies_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
Study (class in transmart_loader.transmart)
(transmart_loader.copy_writer.VisualAttribute attribute)
study_dimensions_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
StudyNode (class in transmart_loader.transmart)
success() (transmart_loader.console.Console static method)
T
Text (transmart_loader.copy_writer.VisualAttribute attribute)
(transmart_loader.transmart.ValueType attribute)
TextValue (class in transmart_loader.transmart)
title() (transmart_loader.console.Console static method)
transmart_loader (module)
transmart_loader.collection_validator (module)
transmart_loader.collection_visitor (module)
transmart_loader.console (module)
transmart_loader.copy_writer (module)
transmart_loader.csv_types (module)
transmart_loader.loader_exception (module)
transmart_loader.transmart (module)
transmart_loader.tsv_writer (module)
TransmartCopyWriter (class in transmart_loader.copy_writer)
tree_nodes_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
TreeNode (class in transmart_loader.transmart)
trial_visits_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
TrialVisit (class in transmart_loader.transmart)
TsvWriter (class in transmart_loader.tsv_writer)
V
validate() (transmart_loader.collection_validator.CollectionValidator static method)
Value (class in transmart_loader.transmart)
value (transmart_loader.transmart.Value attribute)
value() (transmart_loader.transmart.CategoricalValue method)
(transmart_loader.transmart.DateValue method)
(transmart_loader.transmart.NumericalValue method)
(transmart_loader.transmart.TextValue method)
value_type (transmart_loader.transmart.Value attribute)
value_type() (transmart_loader.transmart.CategoricalValue method)
(transmart_loader.transmart.DateValue method)
(transmart_loader.transmart.NumericalValue method)
(transmart_loader.transmart.TextValue method)
value_type_codes (transmart_loader.copy_writer.TransmartCopyWriter attribute)
ValueType (class in transmart_loader.transmart)
Visit (class in transmart_loader.transmart)
visit() (transmart_loader.collection_visitor.CollectionVisitor method)
visit_concept() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_node() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_observation() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_patient() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_study() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_tree_node() (transmart_loader.copy_writer.TransmartCopyWriter method)
visit_trial_visit() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visit_visit() (transmart_loader.collection_validator.CollectionValidator method)
(transmart_loader.collection_visitor.CollectionVisitor method)
(transmart_loader.copy_writer.TransmartCopyWriter method)
visits_header (transmart_loader.copy_writer.TransmartCopyWriter attribute)
VisualAttribute (class in transmart_loader.copy_writer)
W
warning() (transmart_loader.console.Console static method)
write_collection() (transmart_loader.copy_writer.TransmartCopyWriter method)
write_dimension() (transmart_loader.copy_writer.TransmartCopyWriter method)
write_dimensions() (transmart_loader.copy_writer.TransmartCopyWriter method)
write_study_dimensions() (transmart_loader.copy_writer.TransmartCopyWriter method)
writerow() (transmart_loader.csv_types.CsvWriter method)
(transmart_loader.tsv_writer.TsvWriter method)
writerows() (transmart_loader.csv_types.CsvWriter method)
(transmart_loader.tsv_writer.TsvWriter method)
Y
Yellow (transmart_loader.console.Console attribute)
YellowBackground (transmart_loader.console.Console attribute)
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